Implement programmer agent system and consolidate agent infrastructure

Programmer Agent System:
- Add programmer-orchestrator (Opus) for workflow coordination
- Add code-planner (Sonnet) for design and planning
- Add code-implementer (Sonnet) for writing code
- Add code-reviewer (Sonnet) for quality review
- Add /programmer command and project registration skill
- Add state files for preferences and project context

Agent Infrastructure:
- Add master-orchestrator and linux-sysadmin agents
- Restructure skills to use SKILL.md subdirectory format
- Convert workflows from markdown to YAML format
- Add commands for k8s and sysadmin domains
- Add shared state files (model-policy, autonomy-levels, system-instructions)
- Add PA memory system (decisions, preferences, projects, facts)

Cleanup:
- Remove deprecated markdown skills and workflows
- Remove crontab example (moved to workflows)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

skills/programmer-add-project/SKILL.md

@@ -0,0 +1,69 @@
+---
+name: programmer-add-project
+description: Register a new project with the programmer agent system
+---
+
+# Add Project to Programmer Agent
+
+Register a new project for context-aware code development.
+
+## Gather Information
+
+Collect from the user:
+
+1. **Project path**: Absolute path to project root
+2. **Project name**: Short identifier (used for filename)
+3. **Description**: What the project does (1-2 sentences)
+4. **Tech stack**: Languages, frameworks, databases
+5. **Conventions**: Path to conventions file or brief description
+
+## Validate
+
+Before creating:
+
+1. Verify the path exists: `ls <path>`
+2. Check for existing project file: `~/.claude/state/programmer/projects/<name>.json`
+3. Look for conventions file if path provided
+
+## Create Project File
+
+Write to `~/.claude/state/programmer/projects/<name>.json`:
+
+```json
+{
+  "path": "/absolute/path/to/project",
+  "description": "Description of the project",
+  "stack": ["language", "framework", "database"],
+  "conventions": "See CONTRIBUTING.md or brief description",
+  "recentWork": [],
+  "activeTodos": [],
+  "created": "YYYY-MM-DD"
+}
+```
+
+## Output
+
+Confirm to user:
+
+```markdown
+## Project Registered
+
+- **Name**: project-name
+- **Path**: /path/to/project
+- **Stack**: language, framework
+- **Config**: `~/.claude/state/programmer/projects/project-name.json`
+
+The programmer agent will now use this context when working in this project.
+```
+
+## Example Interaction
+
+User: "Add my inventory-api project"
+
+Agent:
+1. Ask for project path
+2. Ask for description
+3. Ask for tech stack
+4. Look for CONTRIBUTING.md or conventions
+5. Create project file
+6. Confirm registration