Implement programmer agent system and consolidate agent infrastructure

Programmer Agent System:
- Add programmer-orchestrator (Opus) for workflow coordination
- Add code-planner (Sonnet) for design and planning
- Add code-implementer (Sonnet) for writing code
- Add code-reviewer (Sonnet) for quality review
- Add /programmer command and project registration skill
- Add state files for preferences and project context

Agent Infrastructure:
- Add master-orchestrator and linux-sysadmin agents
- Restructure skills to use SKILL.md subdirectory format
- Convert workflows from markdown to YAML format
- Add commands for k8s and sysadmin domains
- Add shared state files (model-policy, autonomy-levels, system-instructions)
- Add PA memory system (decisions, preferences, projects, facts)

Cleanup:
- Remove deprecated markdown skills and workflows
- Remove crontab example (moved to workflows)

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

state/personal-assistant/general-instructions.json

@@ -1,5 +1,12 @@
 {
   "version": "1.0",
   "description": "User instructions optimized for agent consumption",
-  "items": []
+  "items": [
+    {
+      "id": "a1b2c3d4-5678-90ab-cdef-111111111111",
+      "instruction": "Delegate technical tasks to specialized agents. Use skills and slash commands for quick technical checks.",
+      "status": "active",
+      "added": "2025-01-21"
+    }
+  ]
 }

state/personal-assistant/history/index.json

@@ -0,0 +1,131 @@
+{
+  "version": "1.0",
+  "sessions": [
+    {
+      "id": "2025-12-29_10-36-32",
+      "started": "2025-12-29T10:36:32-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_10-38-46",
+      "started": "2025-12-29T10:38:46-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_10-59-33",
+      "started": "2025-12-29T10:59:33-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-10-38",
+      "started": "2025-12-29T11:10:38-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-20-09",
+      "started": "2025-12-29T11:20:09-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-20-12",
+      "started": "2025-12-29T11:20:12-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-20-17",
+      "started": "2025-12-29T11:20:17-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-20-25",
+      "started": "2025-12-29T11:20:25-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-20-49",
+      "started": "2025-12-29T11:20:49-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-25-40",
+      "started": "2025-12-29T11:25:40-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-25-44",
+      "started": "2025-12-29T11:25:44-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-26-31",
+      "started": "2025-12-29T11:26:31-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-26-33",
+      "started": "2025-12-29T11:26:33-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-28-05",
+      "started": "2025-12-29T11:28:05-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-28-06",
+      "started": "2025-12-29T11:28:06-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_11-47-07",
+      "started": "2025-12-29T11:47:07-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_12-31-06",
+      "started": "2025-12-29T12:31:06-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    },
+    {
+      "id": "2025-12-29_12-31-10",
+      "started": "2025-12-29T12:31:10-08:00",
+      "ended": null,
+      "summarized": false,
+      "topics": []
+    }
+  ]
+}

state/personal-assistant/kb.json

@@ -0,0 +1 @@
+{}

state/personal-assistant/memory/decisions.json

@@ -0,0 +1,5 @@
+{
+  "version": "1.0",
+  "description": "Decisions made with rationale",
+  "items": []
+}

state/personal-assistant/memory/facts.json

@@ -0,0 +1,5 @@
+{
+  "version": "1.0",
+  "description": "Factual knowledge about the environment",
+  "items": []
+}

state/personal-assistant/memory/meta.json

@@ -0,0 +1,11 @@
+{
+  "version": "1.0",
+  "last_summarized": null,
+  "total_sessions": 0,
+  "total_items": {
+    "decisions": 0,
+    "preferences": 0,
+    "projects": 0,
+    "facts": 0
+  }
+}

state/personal-assistant/memory/preferences.json

@@ -0,0 +1,5 @@
+{
+  "version": "1.0",
+  "description": "User preferences learned over time",
+  "items": []
+}

state/personal-assistant/memory/projects.json

@@ -0,0 +1,5 @@
+{
+  "version": "1.0",
+  "description": "Active and recent project context",
+  "items": []
+}

state/personal-assistant/session-context.json

@@ -1,6 +1 @@
-{
-  "version": "1.0",
-  "current_context_level": null,
-  "set_at": null,
-  "set_by": null
-}
+{"version":"1.0","current_context_level":null,"set_at":null,"set_by":null}