Implement Model Context Protocol (MCP) support so Flynn can spawn MCP
server processes, discover their tools, and make them available to the
agent alongside builtin tools.
- McpClient: wraps @modelcontextprotocol/sdk with StdioClientTransport
for process lifecycle, tool discovery (listTools), and invocation (callTool)
- McpManager: lifecycle management for multiple MCP servers with
startAll/stopAll/restart, tool bridging into ToolRegistry
- Bridge: converts MCP tools to Flynn Tool interface with mcp:<server>:<tool>
namespacing to avoid collisions with builtin tools
- Config: add env and cwd fields to mcp server schema
- ToolRegistry: add unregister() method for MCP server cleanup
- Daemon: wire McpManager into startup and shutdown lifecycle
- Tests: 28 new tests (bridge, manager, registry unregister)