Initial commit: Complete NodeJS-native setup

- Migrated from Python pre-commit to NodeJS-native solution
- Reorganized documentation structure
- Set up Husky + lint-staged for efficient pre-commit hooks
- Fixed Dockerfile healthcheck issue
- Added comprehensive documentation index

docs/DOCS_UPDATE_SUMMARY.md

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+# Documentation Updates Summary
+
+## Files Updated
+
+### 📚 Main Documentation
+
+- **`docs/CODE_QUALITY.md`** - Comprehensive code quality and pre-commit hooks documentation
+- **`README.md`** - Updated development and code quality sections
+- **`SETUP_COMPLETE.md`** - Updated quick reference guide
+
+## Key Updates Made
+
+### 1. Enhanced Code Quality Documentation (`docs/CODE_QUALITY.md`)
+
+- ✅ Added detailed pre-commit hook descriptions
+- ✅ Updated Python virtual environment paths for commands
+- ✅ Added comprehensive troubleshooting section
+- ✅ Enhanced IDE integration instructions with VS Code settings
+- ✅ Added security tools documentation (detect-secrets)
+- ✅ Updated manual command examples with correct paths
+
+### 2. Main README Updates (`README.md`)
+
+- ✅ Updated "Development Tools" section to include new formatting tools
+- ✅ Enhanced "Code Quality" section with comprehensive commands
+- ✅ Added reference to detailed code quality documentation
+- ✅ Added Code Quality Guide to project documentation index
+- ✅ Updated commands to reflect current npm scripts
+
+### 3. Quick Reference Guide (`SETUP_COMPLETE.md`)
+
+- ✅ Updated tool descriptions to be more comprehensive
+- ✅ Added Python virtual environment information
+- ✅ Updated command examples with correct paths
+- ✅ Enhanced configuration file descriptions
+
+## Current Setup Summary
+
+### 🔧 Tools Configured
+
+- **Pre-commit hooks** with 15+ quality checks
+- **Prettier** for comprehensive code formatting
+- **ESLint** with TypeScript and React rules
+- **TypeScript** type checking
+- **Security scanning** with detect-secrets
+- **Docker linting** with Hadolint
+- **Shell script linting** with ShellCheck
+- **Markdown linting** for documentation quality
+
+### 📁 Key Files
+
+- `.pre-commit-config.yaml` - Comprehensive hook configuration
+- `.prettierrc` - Formatting rules optimized for TypeScript/React
+- `eslint.config.cjs` - Enhanced linting rules
+- `.editorconfig` - Editor consistency
+- `.secrets.baseline` - Security baseline
+- `scripts/setup-pre-commit.sh` - Automated setup
+- Python virtual environment (`.venv/`) - Isolated tool environment
+
+### 🚀 Available Commands
+
+```bash
+# Code Quality
+bun run format          # Format all files
+bun run format:check    # Check formatting
+bun run lint           # Lint code
+bun run lint:fix       # Fix linting issues
+bun run type-check     # TypeScript checks
+bun run pre-commit     # Run lint-staged
+
+# Pre-commit Hooks
+/home/will/Code/meds/.venv/bin/pre-commit run --all-files
+/home/will/Code/meds/.venv/bin/pre-commit autoupdate
+```
+
+## Next Steps
+
+1. **Test the setup**: Run `bun run format` and `bun run lint:fix` to verify everything works
+2. **Make a commit**: Test that pre-commit hooks run automatically
+3. **Configure IDE**: Install recommended VS Code extensions for optimal experience
+4. **Review docs**: Check `docs/CODE_QUALITY.md` for comprehensive setup details
+
+---
+
+**All documentation is now up-to-date with the current code quality setup! 🎉**