Compare commits
8 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
 William Valentin
|
21dd1fc9c8 | ||
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William Valentin
|
5243352867 | ||
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William Valentin
|
387981aa47 | ||
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William Valentin
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13b2c9c416 | ||
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William Valentin
|
4c04bfb92e | ||
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William Valentin
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2fe45e65eb | ||
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William Valentin
|
036b4d1215 | ||
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William Valentin
|
ce986db27b |
+1
-1
@@ -47,7 +47,7 @@ htmlcov/
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.pylint.d/
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# IDEs and editors
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.vscode/
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#.vscode/
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!.vscode/tasks.json
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!.vscode/launch.json
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.idea/
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Vendored
+7
-1
@@ -4,7 +4,13 @@
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{
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"label": "Run TheChart App",
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"type": "shell",
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"command": "cd /home/will/Code/thechart && python -m src.main",
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"command": "/home/will/Code/thechart/.venv/bin/python",
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"args": [
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"src/main.py"
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],
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"options": {
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"cwd": "/home/will/Code/thechart"
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},
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"group": "build",
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"isBackground": false,
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"problemMatcher": []
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@@ -88,7 +88,7 @@ build: ## Build the Docker image
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docker buildx build --platform linux/amd64,linux/arm64 -t ${IMAGE} --push .
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deploy: ## Deploy the application as a standalone executable
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@echo "Deploying the application..."
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pyinstaller --name ${TARGET} --optimize 2 --onefile --windowed --hidden-import='PIL._tkinter_finder' --icon='${ICON}' --add-data="./.env:." --add-data='./chart-671.png:.' --add-data='./thechart_data.csv:.' src/main.py
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pyinstaller --name ${TARGET} --optimize 2 --onefile --windowed --hidden-import='PIL._tkinter_finder' --icon='${ICON}' --add-data="./.env:." --add-data='./chart-671.png:.' --add-data='./thechart_data.csv:.' --log-level=DEBUG src/main.py
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cp -f ./thechart_data.csv ${ROOT}/Documents/
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cp -f ./dist/${TARGET} ${ROOT}/Applications/
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cp -f ./deploy/${TARGET}.desktop ${ROOT}/.local/share/applications/
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-756
@@ -1,756 +0,0 @@
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<!-- Generated by coverage.py: https://coverage.readthedocs.io/en/7.10.1 -->
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<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
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<sources>
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<source>/home/will/Code/thechart/src</source>
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</sources>
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</class>
|
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</classes>
|
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</package>
|
||||
</packages>
|
||||
</coverage>
|
||||
+1
-1
@@ -1,6 +1,6 @@
|
||||
[project]
|
||||
name = "thechart"
|
||||
version = "1.0.1"
|
||||
version = "1.2.1"
|
||||
description = "Chart to monitor your medication intake over time."
|
||||
readme = "README.md"
|
||||
requires-python = ">=3.13"
|
||||
|
||||
@@ -12,7 +12,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_automated_multiple_punches():
|
||||
|
||||
@@ -10,7 +10,7 @@ import sys
|
||||
# Add the src directory to the Python path
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
from data_manager import DataManager
|
||||
from src.data_manager import DataManager
|
||||
|
||||
# Set up simple logging
|
||||
logging.basicConfig(level=logging.DEBUG)
|
||||
|
||||
@@ -10,7 +10,7 @@ import sys
|
||||
# Add the src directory to the path so we can import our modules
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
from data_manager import DataManager
|
||||
from src.data_manager import DataManager
|
||||
|
||||
|
||||
def test_delete_functionality():
|
||||
|
||||
@@ -14,7 +14,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def demonstrate_multiple_doses():
|
||||
|
||||
@@ -11,7 +11,7 @@ import sys
|
||||
# Add the src directory to the path so we can import our modules
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
from data_manager import DataManager
|
||||
from src.data_manager import DataManager
|
||||
|
||||
|
||||
def test_dose_editing_functionality():
|
||||
@@ -100,7 +100,7 @@ def test_dose_editing_functionality():
|
||||
try:
|
||||
import tkinter as tk
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
# Create a temporary UI manager to test the parsing
|
||||
root = tk.Tk()
|
||||
|
||||
@@ -9,8 +9,8 @@ from datetime import datetime
|
||||
|
||||
sys.path.append(os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
from data_manager import DataManager
|
||||
from init import logger
|
||||
from src.data_manager import DataManager
|
||||
from src.init import logger
|
||||
|
||||
|
||||
def test_dose_tracking():
|
||||
|
||||
@@ -9,8 +9,8 @@ import sys
|
||||
# Add src to path
|
||||
sys.path.append(os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
from data_manager import DataManager
|
||||
from init import logger
|
||||
from src.data_manager import DataManager
|
||||
from src.init import logger
|
||||
|
||||
|
||||
def test_edit_functionality():
|
||||
|
||||
@@ -11,7 +11,7 @@ import sys
|
||||
# Add the src directory to the path so we can import our modules
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
from data_manager import DataManager
|
||||
from src.data_manager import DataManager
|
||||
|
||||
|
||||
def test_edit_window_functionality():
|
||||
|
||||
@@ -12,7 +12,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_edit_window_punch_buttons():
|
||||
|
||||
@@ -11,7 +11,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def final_verification_test():
|
||||
|
||||
@@ -12,7 +12,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_parse_dose_text():
|
||||
|
||||
@@ -12,7 +12,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_multiple_punch_and_save():
|
||||
|
||||
@@ -12,7 +12,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_programmatic_punch():
|
||||
|
||||
@@ -11,7 +11,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_punch_button_step_by_step():
|
||||
|
||||
@@ -11,7 +11,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_punch_button_only():
|
||||
|
||||
@@ -12,7 +12,7 @@ sys.path.insert(0, os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
import logging
|
||||
|
||||
from ui_manager import UIManager
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
|
||||
def test_save_functionality():
|
||||
|
||||
@@ -14,8 +14,8 @@ sys.path.append(os.path.join(os.path.dirname(__file__), "src"))
|
||||
|
||||
def test_scrollable_input():
|
||||
"""Test the scrollable input frame."""
|
||||
from init import logger
|
||||
from ui_manager import UIManager
|
||||
from src.init import logger
|
||||
from src.ui_manager import UIManager
|
||||
|
||||
# Create a test window
|
||||
root = tk.Tk()
|
||||
|
||||
@@ -1,5 +0,0 @@
|
||||
"""The Chart - Medication tracking application."""
|
||||
|
||||
__version__ = "1.1.0"
|
||||
__author__ = "Will"
|
||||
__description__ = "Chart to monitor your medication intake over time."
|
||||
+5
-1
@@ -1,8 +1,12 @@
|
||||
import os
|
||||
import sys
|
||||
|
||||
from dotenv import load_dotenv
|
||||
|
||||
load_dotenv(override=True)
|
||||
extDataDir = os.getcwd()
|
||||
if getattr(sys, "frozen", False):
|
||||
extDataDir = sys._MEIPASS
|
||||
load_dotenv(dotenv_path=os.path.join(extDataDir, ".env"))
|
||||
|
||||
LOG_LEVEL = os.getenv("LOG_LEVEL", "INFO").upper()
|
||||
LOG_PATH = os.getenv("LOG_PATH", "/tmp/logs/thechart")
|
||||
|
||||
+28
-3
@@ -108,9 +108,32 @@ class DataManager:
|
||||
return False
|
||||
|
||||
# Find the row to update using original_date as a unique identifier
|
||||
# Handle both old format (10 columns) and new format (14 columns)
|
||||
if len(values) == 14:
|
||||
# New format with dose columns
|
||||
# Handle both old format (10 columns) and new format (16 columns)
|
||||
if len(values) == 16:
|
||||
# New format with all dose columns including quetiapine
|
||||
df.loc[
|
||||
df["date"] == original_date,
|
||||
[
|
||||
"date",
|
||||
"depression",
|
||||
"anxiety",
|
||||
"sleep",
|
||||
"appetite",
|
||||
"bupropion",
|
||||
"bupropion_doses",
|
||||
"hydroxyzine",
|
||||
"hydroxyzine_doses",
|
||||
"gabapentin",
|
||||
"gabapentin_doses",
|
||||
"propranolol",
|
||||
"propranolol_doses",
|
||||
"quetiapine",
|
||||
"quetiapine_doses",
|
||||
"note",
|
||||
],
|
||||
] = values
|
||||
elif len(values) == 14:
|
||||
# Format without quetiapine
|
||||
df.loc[
|
||||
df["date"] == original_date,
|
||||
[
|
||||
@@ -192,6 +215,8 @@ class DataManager:
|
||||
"gabapentin_doses": "",
|
||||
"propranolol": 0,
|
||||
"propranolol_doses": "",
|
||||
"quetiapine": 0,
|
||||
"quetiapine_doses": "",
|
||||
"note": "",
|
||||
}
|
||||
df = pd.concat([df, pd.DataFrame([new_entry])], ignore_index=True)
|
||||
|
||||
+2
-2
@@ -138,8 +138,8 @@ class MedTrackerApp:
|
||||
full_row["gabapentin_doses"],
|
||||
full_row["propranolol"],
|
||||
full_row["propranolol_doses"],
|
||||
full_row.get("quetiapine", 0),
|
||||
full_row.get("quetiapine_doses", ""),
|
||||
full_row["quetiapine"],
|
||||
full_row["quetiapine_doses"],
|
||||
full_row["note"],
|
||||
)
|
||||
else:
|
||||
|
||||
+25
-25
@@ -20,9 +20,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_LEVEL == "INFO"
|
||||
assert src.constants.LOG_LEVEL == "INFO"
|
||||
|
||||
def test_custom_log_level(self):
|
||||
"""Test custom LOG_LEVEL from environment."""
|
||||
@@ -31,9 +31,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_LEVEL == "DEBUG"
|
||||
assert src.constants.LOG_LEVEL == "DEBUG"
|
||||
|
||||
def test_default_log_path(self):
|
||||
"""Test default LOG_PATH when not set in environment."""
|
||||
@@ -42,9 +42,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_PATH == "/tmp/logs/thechart"
|
||||
assert src.constants.LOG_PATH == "/tmp/logs/thechart"
|
||||
|
||||
def test_custom_log_path(self):
|
||||
"""Test custom LOG_PATH from environment."""
|
||||
@@ -53,9 +53,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_PATH == "/custom/log/path"
|
||||
assert src.constants.LOG_PATH == "/custom/log/path"
|
||||
|
||||
def test_default_log_clear(self):
|
||||
"""Test default LOG_CLEAR when not set in environment."""
|
||||
@@ -64,9 +64,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_CLEAR == "False"
|
||||
assert src.constants.LOG_CLEAR == "False"
|
||||
|
||||
def test_custom_log_clear_true(self):
|
||||
"""Test LOG_CLEAR when set to true in environment."""
|
||||
@@ -75,9 +75,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_CLEAR == "True"
|
||||
assert src.constants.LOG_CLEAR == "True"
|
||||
|
||||
def test_custom_log_clear_false(self):
|
||||
"""Test LOG_CLEAR when set to false in environment."""
|
||||
@@ -86,9 +86,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_CLEAR == "False"
|
||||
assert src.constants.LOG_CLEAR == "False"
|
||||
|
||||
def test_log_level_case_insensitive(self):
|
||||
"""Test that LOG_LEVEL is converted to uppercase."""
|
||||
@@ -97,9 +97,9 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_LEVEL == "WARNING"
|
||||
assert src.constants.LOG_LEVEL == "WARNING"
|
||||
|
||||
def test_dotenv_override(self):
|
||||
"""Test that dotenv override parameter is set to True."""
|
||||
@@ -109,22 +109,22 @@ class TestConstants:
|
||||
if 'constants' in sys.modules:
|
||||
importlib.reload(sys.modules['constants'])
|
||||
else:
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
mock_load_dotenv.assert_called_once_with(override=True)
|
||||
|
||||
def test_all_constants_are_strings(self):
|
||||
"""Test that all constants are string type."""
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert isinstance(constants.LOG_LEVEL, str)
|
||||
assert isinstance(constants.LOG_PATH, str)
|
||||
assert isinstance(constants.LOG_CLEAR, str)
|
||||
assert isinstance(src.constants.LOG_LEVEL, str)
|
||||
assert isinstance(src.constants.LOG_PATH, str)
|
||||
assert isinstance(src.constants.LOG_CLEAR, str)
|
||||
|
||||
def test_constants_not_empty(self):
|
||||
"""Test that constants are not empty strings."""
|
||||
import constants
|
||||
import src.constants
|
||||
|
||||
assert constants.LOG_LEVEL != ""
|
||||
assert constants.LOG_PATH != ""
|
||||
assert constants.LOG_CLEAR != ""
|
||||
assert src.constants.LOG_LEVEL != ""
|
||||
assert src.constants.LOG_PATH != ""
|
||||
assert src.constants.LOG_CLEAR != ""
|
||||
|
||||
@@ -12,7 +12,7 @@ import matplotlib.pyplot as plt
|
||||
import sys
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..', 'src'))
|
||||
|
||||
from graph_manager import GraphManager
|
||||
from src.graph_manager import GraphManager
|
||||
|
||||
|
||||
class TestGraphManager:
|
||||
|
||||
+19
-19
@@ -24,7 +24,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
mock_mkdir.assert_called_once()
|
||||
|
||||
@@ -38,7 +38,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
mock_mkdir.assert_not_called()
|
||||
|
||||
@@ -53,7 +53,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
mock_print.assert_called()
|
||||
|
||||
@@ -70,7 +70,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
mock_init_logger.assert_called_once_with('init', testing_mode=False)
|
||||
|
||||
@@ -87,7 +87,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
mock_init_logger.assert_called_once_with('init', testing_mode=True)
|
||||
|
||||
@@ -98,7 +98,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
expected_files = (
|
||||
f"{temp_log_dir}/thechart.log",
|
||||
@@ -106,7 +106,7 @@ class TestInit:
|
||||
f"{temp_log_dir}/thechart.error.log",
|
||||
)
|
||||
|
||||
assert init.log_files == expected_files
|
||||
assert src.init.log_files == expected_files
|
||||
|
||||
def test_testing_mode_detection(self, temp_log_dir):
|
||||
"""Test that testing mode is detected correctly."""
|
||||
@@ -117,14 +117,14 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
assert init.testing_mode is True
|
||||
assert src.init.testing_mode is True
|
||||
|
||||
# Test with non-DEBUG level
|
||||
with patch('init.LOG_LEVEL', 'INFO'):
|
||||
importlib.reload(sys.modules['init'])
|
||||
assert init.testing_mode is False
|
||||
assert src.init.testing_mode is False
|
||||
|
||||
def test_log_clear_true(self, temp_log_dir):
|
||||
"""Test log file clearing when LOG_CLEAR is True."""
|
||||
@@ -147,7 +147,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
# Check that files were truncated
|
||||
for log_file in log_files:
|
||||
@@ -176,7 +176,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
# Check that files were not truncated
|
||||
for log_file in log_files:
|
||||
@@ -203,7 +203,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
def test_log_clear_permission_error(self, temp_log_dir):
|
||||
"""Test handling of permission errors during log clearing."""
|
||||
@@ -226,7 +226,7 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
def test_module_exports(self, temp_log_dir):
|
||||
"""Test that module exports expected objects."""
|
||||
@@ -235,12 +235,12 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
# Check that expected objects are available
|
||||
assert hasattr(init, 'logger')
|
||||
assert hasattr(init, 'log_files')
|
||||
assert hasattr(init, 'testing_mode')
|
||||
assert hasattr(src.init, 'logger')
|
||||
assert hasattr(src.init, 'log_files')
|
||||
assert hasattr(src.init, 'testing_mode')
|
||||
|
||||
def test_log_path_printing(self, temp_log_dir):
|
||||
"""Test that LOG_PATH is printed when directory is created."""
|
||||
@@ -253,6 +253,6 @@ class TestInit:
|
||||
if 'init' in sys.modules:
|
||||
importlib.reload(sys.modules['init'])
|
||||
else:
|
||||
import init
|
||||
import src.init
|
||||
|
||||
mock_print.assert_called_with(temp_log_dir + '/new_dir')
|
||||
|
||||
@@ -10,7 +10,7 @@ from unittest.mock import patch, Mock
|
||||
import sys
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..', 'src'))
|
||||
|
||||
from logger import init_logger
|
||||
from src.logger import init_logger
|
||||
|
||||
|
||||
class TestLogger:
|
||||
|
||||
+1
-1
@@ -10,7 +10,7 @@ import pandas as pd
|
||||
import sys
|
||||
sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..', 'src'))
|
||||
|
||||
from main import MedTrackerApp
|
||||
from src.main import MedTrackerApp
|
||||
|
||||
|
||||
class TestMedTrackerApp:
|
||||
|
||||
Reference in New Issue
Block a user