c755f0affc
- Implemented `test_dose_parsing_simple.py` to validate the dose parsing workflow. - Created `test_dose_save.py` to verify the saving functionality of dose tracking. - Added `test_dose_save_simple.py` for programmatic testing of dose saving without UI interaction. - Developed `test_final_workflow.py` to test the complete dose tracking workflow, ensuring doses are preserved during edits. - Enhanced `conftest.py` with a mock pathology manager for testing. - Updated `test_data_manager.py` to include pathology manager in DataManager tests and ensure compatibility with new features.
197 lines
6.6 KiB
Python
197 lines
6.6 KiB
Python
"""
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Fixtures and configuration for pytest tests.
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"""
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import os
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import tempfile
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import pytest
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import pandas as pd
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from unittest.mock import Mock
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import logging
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# Add src to path for imports
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import sys
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sys.path.insert(0, os.path.join(os.path.dirname(__file__), '..', 'src'))
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from src.medicine_manager import MedicineManager, Medicine
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@pytest.fixture
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def temp_csv_file():
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"""Create a temporary CSV file for testing."""
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fd, path = tempfile.mkstemp(suffix='.csv')
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os.close(fd)
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yield path
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# Cleanup
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if os.path.exists(path):
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os.unlink(path)
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@pytest.fixture
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def mock_medicine_manager():
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"""Create a mock medicine manager with default medicines for testing."""
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mock_manager = Mock(spec=MedicineManager)
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# Default medicines matching the original system
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default_medicines = {
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"bupropion": Medicine(
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key="bupropion",
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display_name="Bupropion",
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dosage_info="150/300 mg",
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quick_doses=["150", "300"],
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color="#FF6B6B",
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default_enabled=True
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),
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"hydroxyzine": Medicine(
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key="hydroxyzine",
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display_name="Hydroxyzine",
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dosage_info="25 mg",
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quick_doses=["25", "50"],
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color="#4ECDC4",
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default_enabled=False
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),
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"gabapentin": Medicine(
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key="gabapentin",
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display_name="Gabapentin",
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dosage_info="100 mg",
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quick_doses=["100", "300", "600"],
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color="#45B7D1",
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default_enabled=False
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),
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"propranolol": Medicine(
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key="propranolol",
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display_name="Propranolol",
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dosage_info="10 mg",
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quick_doses=["10", "20", "40"],
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color="#96CEB4",
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default_enabled=True
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),
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"quetiapine": Medicine(
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key="quetiapine",
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display_name="Quetiapine",
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dosage_info="25 mg",
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quick_doses=["25", "50", "100"],
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color="#FFEAA7",
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default_enabled=False
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)
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}
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mock_manager.get_medicine_keys.return_value = list(default_medicines.keys())
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mock_manager.get_all_medicines.return_value = default_medicines
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mock_manager.get_medicine.side_effect = lambda key: default_medicines.get(key)
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mock_manager.get_graph_colors.return_value = {k: v.color for k, v in default_medicines.items()}
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mock_manager.get_quick_doses.side_effect = lambda key: default_medicines.get(key, Medicine("", "", "", [], "", False)).quick_doses
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return mock_manager
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@pytest.fixture
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def mock_pathology_manager():
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"""Create a mock pathology manager with default pathologies for testing."""
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mock_manager = Mock()
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# Default pathologies matching the original system
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mock_manager.get_pathology_keys.return_value = ["depression", "anxiety", "sleep", "appetite"]
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return mock_manager
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@pytest.fixture
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def sample_data():
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"""Sample data for testing."""
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return [
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["2024-01-01", 3, 2, 4, 3, 1, "", 0, "", 2, "", 1, "", 0, "", "Test note 1"],
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["2024-01-02", 2, 3, 3, 4, 1, "", 1, "", 2, "", 0, "", 1, "", "Test note 2"],
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["2024-01-03", 4, 1, 5, 2, 0, "", 0, "", 1, "", 1, "", 0, "", ""],
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]
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@pytest.fixture
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def sample_dataframe():
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"""Sample DataFrame for testing."""
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return pd.DataFrame({
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'date': ['2024-01-01', '2024-01-02', '2024-01-03'],
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'depression': [3, 2, 4],
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'anxiety': [2, 3, 1],
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'sleep': [4, 3, 5],
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'appetite': [3, 4, 2],
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'bupropion': [1, 1, 0],
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'bupropion_doses': ['2024-01-01 08:00:00:150mg', '2024-01-02 08:00:00:300mg', ''],
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'hydroxyzine': [0, 1, 0],
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'hydroxyzine_doses': ['', '2024-01-02 20:00:00:25mg', ''],
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'gabapentin': [2, 2, 1],
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'gabapentin_doses': ['2024-01-01 12:00:00:100mg|2024-01-01 20:00:00:100mg',
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'2024-01-02 12:00:00:100mg|2024-01-02 20:00:00:100mg',
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'2024-01-03 12:00:00:100mg'],
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'propranolol': [1, 0, 1],
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'propranolol_doses': ['2024-01-01 12:00:00:10mg', '', '2024-01-03 12:00:00:20mg'],
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'quetiapine': [0, 1, 0],
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'quetiapine_doses': ['', '2024-01-02 22:00:00:50mg', ''],
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'note': ['Test note 1', 'Test note 2', '']
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})
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@pytest.fixture
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def mock_logger():
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"""Mock logger for testing."""
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return Mock(spec=logging.Logger)
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@pytest.fixture
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def temp_log_dir():
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"""Create a temporary directory for log files."""
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with tempfile.TemporaryDirectory() as temp_dir:
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yield temp_dir
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@pytest.fixture
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def mock_env_vars(monkeypatch):
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"""Mock environment variables."""
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monkeypatch.setenv("LOG_LEVEL", "DEBUG")
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monkeypatch.setenv("LOG_PATH", "/tmp/test_logs")
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monkeypatch.setenv("LOG_CLEAR", "False")
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@pytest.fixture
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def sample_dose_data():
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"""Sample dose data for testing dose calculation."""
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return {
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'standard_format': '2025-07-28 18:59:45:150mg|2025-07-28 19:34:19:75mg', # Should sum to 225
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'with_bullets': '• • • • 2025-07-30 07:50:00:300', # Should be 300
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'decimal_doses': '2025-07-28 18:59:45:12.5mg|2025-07-28 19:34:19:7.5mg', # Should sum to 20
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'no_timestamp': '100mg|50mg', # Should sum to 150
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'mixed_format': '• 2025-07-30 22:50:00:10|75mg', # Should sum to 85
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'empty_string': '', # Should be 0
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'nan_value': 'nan', # Should be 0
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'no_units': '2025-07-28 18:59:45:10|2025-07-28 19:34:19:5', # Should sum to 15
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}
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@pytest.fixture
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def legend_test_dataframe():
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"""DataFrame specifically designed for testing legend functionality."""
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return pd.DataFrame({
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'date': ['2024-01-01', '2024-01-02', '2024-01-03'],
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'depression': [3, 2, 4],
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'anxiety': [2, 3, 1],
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'sleep': [4, 3, 5],
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'appetite': [3, 4, 2],
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# Medicine with consistent doses for average testing
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'bupropion': [1, 1, 1],
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'bupropion_doses': ['2024-01-01 08:00:00:100mg',
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'2024-01-02 08:00:00:200mg',
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'2024-01-03 08:00:00:150mg'], # Average: 150mg
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# Medicine with varying doses
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'propranolol': [1, 1, 0],
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'propranolol_doses': ['2024-01-01 12:00:00:10mg',
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'2024-01-02 12:00:00:20mg',
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''], # Average: 15mg (10+20)/2
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# Medicines without dose data
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'hydroxyzine': [0, 0, 0],
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'hydroxyzine_doses': ['', '', ''],
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'gabapentin': [0, 0, 0],
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'gabapentin_doses': ['', '', ''],
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'quetiapine': [0, 0, 0],
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'quetiapine_doses': ['', '', ''],
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'note': ['Test note 1', 'Test note 2', 'Test note 3']
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})
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