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92 lines
2.9 KiB
Python
92 lines
2.9 KiB
Python
"""
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Fixtures and configuration for pytest tests.
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"""
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import os
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import tempfile
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import pytest
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import pandas as pd
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from unittest.mock import Mock
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import logging
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@pytest.fixture
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def temp_csv_file():
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"""Create a temporary CSV file for testing."""
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fd, path = tempfile.mkstemp(suffix='.csv')
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os.close(fd)
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yield path
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# Cleanup
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if os.path.exists(path):
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os.unlink(path)
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@pytest.fixture
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def sample_data():
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"""Sample data for testing."""
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return [
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["2024-01-01", 3, 2, 4, 3, 1, "", 0, "", 2, "", 1, "", 0, "", "Test note 1"],
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["2024-01-02", 2, 3, 3, 4, 1, "", 1, "", 2, "", 0, "", 1, "", "Test note 2"],
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["2024-01-03", 4, 1, 5, 2, 0, "", 0, "", 1, "", 1, "", 0, "", ""],
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]
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@pytest.fixture
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def sample_dataframe():
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"""Sample DataFrame for testing."""
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return pd.DataFrame({
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'date': ['2024-01-01', '2024-01-02', '2024-01-03'],
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'depression': [3, 2, 4],
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'anxiety': [2, 3, 1],
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'sleep': [4, 3, 5],
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'appetite': [3, 4, 2],
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'bupropion': [1, 1, 0],
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'bupropion_doses': ['2024-01-01 08:00:00:150mg', '2024-01-02 08:00:00:300mg', ''],
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'hydroxyzine': [0, 1, 0],
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'hydroxyzine_doses': ['', '2024-01-02 20:00:00:25mg', ''],
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'gabapentin': [2, 2, 1],
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'gabapentin_doses': ['2024-01-01 12:00:00:100mg|2024-01-01 20:00:00:100mg',
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'2024-01-02 12:00:00:100mg|2024-01-02 20:00:00:100mg',
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'2024-01-03 12:00:00:100mg'],
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'propranolol': [1, 0, 1],
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'propranolol_doses': ['2024-01-01 12:00:00:10mg', '', '2024-01-03 12:00:00:20mg'],
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'quetiapine': [0, 1, 0],
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'quetiapine_doses': ['', '2024-01-02 22:00:00:50mg', ''],
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'note': ['Test note 1', 'Test note 2', '']
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})
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@pytest.fixture
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def mock_logger():
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"""Mock logger for testing."""
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return Mock(spec=logging.Logger)
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@pytest.fixture
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def temp_log_dir():
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"""Create a temporary directory for log files."""
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with tempfile.TemporaryDirectory() as temp_dir:
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yield temp_dir
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@pytest.fixture
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def mock_env_vars(monkeypatch):
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"""Mock environment variables."""
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monkeypatch.setenv("LOG_LEVEL", "DEBUG")
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monkeypatch.setenv("LOG_PATH", "/tmp/test_logs")
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monkeypatch.setenv("LOG_CLEAR", "False")
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@pytest.fixture
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def sample_dose_data():
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"""Sample dose data for testing dose calculation."""
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return {
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'standard_format': '2025-07-28 18:59:45:150mg|2025-07-28 19:34:19:75mg', # Should sum to 225
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'with_bullets': '• • • • 2025-07-30 07:50:00:300', # Should be 300
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'decimal_doses': '2025-07-28 18:59:45:12.5mg|2025-07-28 19:34:19:7.5mg', # Should sum to 20
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'no_timestamp': '100mg|50mg', # Should sum to 150
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'mixed_format': '• 2025-07-30 22:50:00:10|75mg', # Should sum to 85
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'empty_string': '', # Should be 0
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'nan_value': 'nan', # Should be 0
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'no_units': '2025-07-28 18:59:45:10|2025-07-28 19:34:19:5', # Should sum to 15
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}
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